c.min |
Internal sma functions |
chen.func.rotate |
Internal sma functions |
chen.plot.rotate |
Internal sma functions |
chen.poly |
Internal sma functions |
chur.em.func |
Internal sma functions |
chur.M.to.e.func |
Internal sma functions |
chur.norm.func |
Internal sma functions |
chur.pdf |
Internal sma functions |
chur.wrapper.func |
Internal sma functions |
cl |
Internal sma functions |
cor.na |
Basic Statistical Functions for Handling Missing Values |
dc.min |
Internal sma functions |
draw.image.func |
Spatial Representation of Microarray Spot Statistics |
func.em |
Internal sma functions |
givelim |
Internal sma functions |
id2image |
Converting an id tag to a Set of Image Coordinates and Vice Versa |
image2id |
Converting an id tag to a Set of Image Coordinates and Vice Versa |
in.func |
Internal sma functions |
init.addinfo |
Adding Information to a Data Structure for Multi-slide Microarray Experiments |
init.ctl.index |
Generates co-ordinates of spots. |
init.data |
Creating a Data Structure for Multi-slide Microarray Experiments |
init.grid |
Initialization of Grid Parameters |
init.name.exp |
Set and Read the Names of Experimental Data. |
init.names |
Set and Read the Names of Experimental Data. |
init.read.exp |
Reads the Output of the Computed Statistics |
init.show.exp |
Set and Read the Names of Experimental Data. |
internal functions |
Internal sma functions |
is.even |
Determining if a Value is Odd or Even |
is.odd |
Determining if a Value is Odd or Even |
length.na |
Basic Statistical Functions for Handling Missing Values |
lf.func |
Internal sma functions |
lod2 |
Internal sma functions |
lods.func |
Internal sma functions |
log.na |
Basic Statistical Functions for Handling Missing Values |
ma.func |
Calculation of log Intensity Ratios and Average log Intensities |
mean.na |
Basic Statistical Functions for Handling Missing Values |
mouse.data |
Internal sma functions |
mouse.gnames |
Mouse Gene Expression Data from cDNA microarray |
mouse.lratio |
Internal sma functions |
mouse.setup |
Internal sma functions |
mouse.t2 |
Internal sma functions |
mouse1 |
Mouse Gene Expression Data from cDNA microarray |
mouse2 |
Mouse Gene Expression Data from cDNA microarray |
mouse3 |
Mouse Gene Expression Data from cDNA microarray |
mouse4 |
Mouse Gene Expression Data from cDNA microarray |
mouse5 |
Mouse Gene Expression Data from cDNA microarray |
mouse6 |
Mouse Gene Expression Data from cDNA microarray |
MouseArray |
Mouse Gene Expression Data from cDNA microarray |
na |
Basic Statistical Functions for Handling Missing Values |
newton.plot.rotate |
Internal sma functions |
norm.l.func |
Calculation of log Intensity Ratios and Average log Intensities |
norm.pin.func |
Calculation of log Intensity Ratios and Average log Intensities |
norm.scale.func |
Calculation of log Intensity Ratios and Average log Intensities |
nploglik |
Internal sma functions |
nploglikderiv |
Internal sma functions |
order.na |
Basic Statistical Functions for Handling Missing Values |
plot.bayesian |
Plots an Odds Ratio of Each Gene in a Multi-slide microarray Experiment |
plot.confband.lines |
Adding Lines Satisfying a Confidence Criterion to the Current M vs A Plot |
plot.confband.points |
Highlights a Set of Points on the Current M vs A Plot |
plot.confband.text |
Add Selected Text to an M vs A Plot |
plot.cor |
Red and Green Color Image of Correlation Matrix |
plot.mat |
Red and Green Color Image of Data Matrix |
plot.mva |
M vs. A Plot |
plot.qq |
Histogram and Normal Quantile-Quantile plot |
plot.qqline |
Add Line Going Through the Quantiles of a Q-Q Plot |
plot.scale.box |
Box plots for microarray |
plot.smooth.line |
Adding Lowess Lines to Current Plot |
plot.spatial |
Spatial Representation of Microarray Spot Statistics |
plot.svb |
Plot of Signal vs. Background |
plot.t2 |
Diagnostic Plots for Two-Sample t-statistics |
prod.na |
Basic Statistical Functions for Handling Missing Values |
quantile.na |
Basic Statistical Functions for Handling Missing Values |
read.genepix |
Reading in Data Generated by the Image Analysis Package GenePix. |
read.spot |
Reading in Data Generated by the Image Analysis Package Spot |
rgcolors.func |
Red and Green Color Specification |
scale.na |
Basic Statistical Functions for Handling Missing Values |
setup.bayesian |
Internal sma functions |
spatial.func |
Spatial Representation of Microarray Spot Statistics |
sq.func |
Internal sma functions |
sq2.func |
Internal sma functions |
stat.bayesian |
Calculates an Odds Ratio of Each Gene in a Multi-slide microarray Experiment |
stat.bwss |
Between and Within Group Sum of Squares Calculation |
stat.Chen |
Apply Chen's single slide method |
stat.Chen.ma |
Internal sma functions |
stat.ChurSap |
Apply Sapir and Churchills single slide method |
stat.ChurSap.ma |
Internal sma functions |
stat.diag.da |
Diagonal Discriminant Analysis |
stat.gnames |
Sort Genes According to the Value of a Statistic |
stat.ma |
Calculation of log Intensity Ratios and Average log Intensities |
stat.Newton |
Apply Newtons single slide method |
stat.Newton.ma |
Internal sma functions |
stat.norm.exp |
Normalization of log Intensity Ratios across slides / experiments. |
stat.t2 |
Two-sample t-statistics |
sum.na |
Basic Statistical Functions for Handling Missing Values |
svb.func |
Plot of Signal vs. Background |
t2stat.func |
Two-sample t-statistics |
va.func |
Internal sma functions |
va2.func |
Internal sma functions |
var.na |
Basic Statistical Functions for Handling Missing Values |
write.spot |
Writing in Data Generated by the Image Analysis Package Spot |